| MirGeneDB ID | Sha-Novel-16-P23 |
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| Family name |
SHA-NOVEL-16 (all species) |
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| Seed |
AGACAUU |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
Sha-Novel-16-P1
Sha-Novel-16-P2a
Sha-Novel-16-P2b
Sha-Novel-16-P3
Sha-Novel-16-P4
Sha-Novel-16-P5
Sha-Novel-16-P6
Sha-Novel-16-P7
Sha-Novel-16-P8
Sha-Novel-16-P9
Sha-Novel-16-P10
Sha-Novel-16-P11
Sha-Novel-16-P12
Sha-Novel-16-P13
Sha-Novel-16-P14
Sha-Novel-16-P15
Sha-Novel-16-P16
Sha-Novel-16-P17
Sha-Novel-16-P18
Sha-Novel-16-P19
Sha-Novel-16-P20a
Sha-Novel-16-P20b
Sha-Novel-16-P20c
Sha-Novel-16-P20d
Sha-Novel-16-P21
Sha-Novel-16-P22
Sha-Novel-16-P24
Sha-Novel-16-P25
Sha-Novel-16-P26
Sha-Novel-16-P27a1
Sha-Novel-16-P27a2
Sha-Novel-16-P27b
Sha-Novel-16-P27c
Sha-Novel-16-P28
Sha-Novel-16-P29
Sha-Novel-16-P30
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
|
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| Node of Origin (family) |
S. harrisii
|
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Genome context
(DEVIL_add) |
GL867809.1: 16790-16850 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACCUGUACUUUUGAGCUGCUGAAGGUCCACUAGACAUUCUGAUACCCCACUGUUUGUAUGACUCUUUGAACAAUGGCUCUCAGAAUGUUGUGGGCCUUUAGCACCCACAACAUCAUCUUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACCUGUACUUUUGAGCU--| UA UACC C UUGUAUG
GCUGAAGGUCCAC GACAUUCUGA CCA UGU A
CGAUUUCCGGGUG UUGUAAGACU GGU ACA C
UCUUCUACUACAACACCCA^ -- CUC- A AGUUUCU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-16-P23_5p |
| mirBase accession | None |
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| Sequence |
0- UAGACAUUCUGAUACCCCACUGU -23
Get sequence
|
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| Star sequence |
Sha-Novel-16-P23_3p* |
| mirBase accession | None |
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| Sequence |
41- AAUGGCUCUCAGAAUGUUGU -61
Get sequence
|
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