| MirGeneDB ID | Sha-Novel-16-P21 |
|---|
| Family name |
SHA-NOVEL-16 (all species) |
|---|
| Seed |
UGCAUCC |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sha-Novel-16-P1
Sha-Novel-16-P2a
Sha-Novel-16-P2b
Sha-Novel-16-P3
Sha-Novel-16-P4
Sha-Novel-16-P5
Sha-Novel-16-P6
Sha-Novel-16-P7
Sha-Novel-16-P8
Sha-Novel-16-P9
Sha-Novel-16-P10
Sha-Novel-16-P11
Sha-Novel-16-P12
Sha-Novel-16-P13
Sha-Novel-16-P14
Sha-Novel-16-P15
Sha-Novel-16-P16
Sha-Novel-16-P17
Sha-Novel-16-P18
Sha-Novel-16-P19
Sha-Novel-16-P20a
Sha-Novel-16-P20b
Sha-Novel-16-P20c
Sha-Novel-16-P20d
Sha-Novel-16-P22
Sha-Novel-16-P23
Sha-Novel-16-P24
Sha-Novel-16-P25
Sha-Novel-16-P26
Sha-Novel-16-P27a1
Sha-Novel-16-P27a2
Sha-Novel-16-P27b
Sha-Novel-16-P27c
Sha-Novel-16-P28
Sha-Novel-16-P29
Sha-Novel-16-P30
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. harrisii
|
|---|
| Node of Origin (family) |
S. harrisii
|
|---|
Genome context
(DEVIL_add) |
GL867809.1: 8611-8670 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGCUGUAUUUUUGUGCUGCUGAAGUUCCCUAUGCAUCCUGAAAUCCCAUUGUUUGUAUGUUUUUUUCAACAAUGUGUUUCAGAAUGUAGUGGGCCUUUAGCCCUUACAACAUCUUCUUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGCUGUAUUUUUGUGCU--| UU CUA C CC UGUAUG
GCUGAAG CC UGCAU CUGAAAU CAUUGUU U
CGAUUUC GG AUGUA GACUUUG GUAACAA U
UCUUCUUCUACAACAUUCC^ CG UG- A U- CUUUUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Novel-16-P21_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUGCAUCCUGAAAUCCCAUUGUU -23
Get sequence
|
|---|
| Star sequence |
Sha-Novel-16-P21_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CAAUGUGUUUCAGAAUGUAGU -60
Get sequence
|
|---|
