| MirGeneDB ID | Sha-Mir-7309 |
|---|
| Family name |
MIR-7309 (all species) |
|---|
| Seed |
CAAUGUG |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Mdo-Mir-7309
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(DEVIL_add) |
GL849745.1: 178841-178900 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUGGUCAUCUGCUUUUGUUUGCACACUUCCAGGGAUGGGGAGCUCAGUCAGUGUGUUCCUCCAUUCACUCAAUGUGUUCCCCCUCUCAGGAGUUGUUGCAUUCUAAGCCUCAUGGGAAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGGUCAUCUGCUUUUGUU- -| C A U U GUC GUGUUC
UGC ACA UUCC GGGA GGGGAGC CA AGU C
ACG UGU GAGG CUCU CCCCUUG GU UCA U
GAAAGGGUACUCCGAAUCUU U^ U A C U AAC CUUACC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Sha-Mir-7309_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGAUGGGGAGCUCAGUCAGU -22
Get sequence
|
|---|
| Mature sequence |
Sha-Mir-7309_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCAAUGUGUUCCCCCUCUCAGG -60
Get sequence
|
|---|
