| MirGeneDB ID | Sha-Mir-7309 |
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| Family name |
MIR-7309 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-7309
Neu-Mir-7309
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL849745.1: 178841-178900 [+]
UCSC
Ensembl
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| Seed |
CAAUGUG |
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Precursor
(pre-Mir +30nt flank) |
GUGGUCAUCUGCUUUUGUUUGCACACUUCCAGGGAUGGGGAGCUCAGUCAGUGUGUUCCUCCAUUCACUCAAUGUGUUCCCCCUCUCAGGAGUUGUUGCAUUCUAAGCCUCAUGGGAAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUGGUCAUCUGCUUUUGUU- -| C A U U GUC GUGUUC
UGC ACA UUCC GGGA GGGGAGC CA AGU C
ACG UGU GAGG CUCU CCCCUUG GU UCA U
GAAAGGGUACUCCGAAUCUU U^ U A C U AAC CUUACC
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Mir-7309_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGGAUGGGGAGCUCAGUCAGU -22
Get sequence
|
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| Mature sequence |
Sha-Mir-7309_3p |
| mirBase accession | None |
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| Sequence |
38- UCAAUGUGUUCCCCCUCUCAGG -60
Get sequence
|
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