| MirGeneDB ID | Mdo-Mir-7309 |
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| Family name |
MIR-7309 (all species) |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-7309
|
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| Paralogues |
|
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| Orthologues |
Neu-Mir-7309
Sha-Mir-7309
|
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| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
4: 362633939-362633998 [+]
UCSC
Ensembl
|
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| Seed |
CAAUGUG |
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Precursor
(pre-Mir +30nt flank) |
GUGGUCAUCUGCUUUUGUUUGCACACUUCCAGGGAUGGGGAGCUCAGUCAGUGUGUUCCUCCAUUCACUCAAUGUGUUCCCCCUCUCAGGAGUUGUUGCAUUCUGAGCCUCAUUGGAAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGGUCAUCUGCUUUUGUU- -| C A U U GUC GUGUUC
UGC ACA UUCC GGGA GGGGAGC CA AGU C
ACG UGU GAGG CUCU CCCCUUG GU UCA U
GAAAGGUUACUCCGAGUCUU U^ U A C U AAC CUUACC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Mdo-Mir-7309_5p* |
| mirBase accession | MIMAT0028616 |
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| Sequence |
0- AGGGAUGGGGAGCUCAGUCAGU -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7309-5p
|
|---|
| Mature sequence |
Mdo-Mir-7309_3p |
| mirBase accession | MIMAT0028617 |
|---|
| Sequence |
38- UCAAUGUGUUCCCCCUCUCAGG -60
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-7309-3p
|
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