MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-7309

Family name MIR-7309 (all species)
Seed CAAUGUG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7309
Paralogues
Orthologues Sha-Mir-7309 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
4: 362633939-362633998 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGUCAUCUGCUUUUGUUUGCACACUUCCAGGGAUGGGGAGCUCAGUCAGUGUGUUCCUCCAUUCACUCAAUGUGUUCCCCCUCUCAGGAGUUGUUGCAUUCUGAGCCUCAUUGGAAAG
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Structure
        10         20         30        40        50         
GUGGUCAUCUGCUUUUGUU-   -|  C    A    U       U  GUC   GUGUUC 
                    UGC ACA UUCC GGGA GGGGAGC CA   AGU      C
                    ACG UGU GAGG CUCU CCCCUUG GU   UCA      U
GAAAGGUUACUCCGAGUCUU   U^  U    A    C       U  AAC   CUUACC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7309_5p*

mirBase accessionMIMAT0028616
Sequence
0- AGGGAUGGGGAGCUCAGUCAGU -22
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Proposed targets TargetScanVert: mdo-miR-7309-5p
Mature sequence

Mdo-Mir-7309_3p

mirBase accessionMIMAT0028617
Sequence
38- UCAAUGUGUUCCCCCUCUCAGG -60
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Proposed targets TargetScanVert: mdo-miR-7309-3p