| MirGeneDB ID | Sha-Mir-1542 |
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| Family name |
MIR-1542 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-1542
Neu-Mir-1542
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL861605.1: 2615775-2615836 [-]
UCSC
Ensembl
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| Seed |
AUUGAUC |
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Precursor
(pre-Mir +30nt flank) |
AUUGAUGGAUCUCCAGAGCCUAGUACAGUGCCUGGCACAUAGGAGCUUCAUAAAUGUGUGUUGAUUUAUUUAUUGAUCUCCAAUGCCUAGCACUGUGCCUGGCAAUAAGAGCUUCAUAAAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUGAUGGAUCUCCAGA--| UA CU CAUA CU - UGUGUG
GCC GUACAGUGC GGCA GGAG UCA UAAA U
CGG CGUGUCACG CCGU CCUC AGU AUUU U
GGAAAUACUUCGAGAAUAA^ UC AU AA-- U- U AUUUAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Mir-1542_5p* |
| mirBase accession | None |
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| Sequence |
0- CCUGGCACAUAGGAGCUUCAUAAA -24
Get sequence
|
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| Mature sequence |
Sha-Mir-1542_3p |
| mirBase accession | None |
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| Sequence |
40- UAUUGAUCUCCAAUGCCUAGCA -62
Get sequence
|
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