| MirGeneDB ID | Sha-Mir-1540 |
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| Family name |
MIR-1540 (all species) |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
sha-mir-1540
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| Paralogues |
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| Orthologues |
Mdo-Mir-1540
Neu-Mir-1540
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL836570.1: 10682-10740 [+]
UCSC
Ensembl
|
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| Seed |
CAUGCGC |
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Precursor
(pre-Mir +30nt flank) |
CUAGGUCAGGAAGCUCAAUGUGGUGGGGGUGAUUCCAUGGAGCAUAUGCUCUGGCUCUCUGGGGAUGGACAUGCGCUCUAUGGAAUCACCCCCGCUACAUAAGUGUCUGUGUAGUAGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAGGUCAGGAAGCUCA--| A CU UGGCUCU
AUGUGGUGGGGGUGAUUCCAUGGAGC UAUG C \
UACAUCGCCCCCACUAAGGUAUCUCG GUAC G C
GAGAUGAUGUGUCUGUGAA^ C AG UAGGGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Mir-1540_5p* |
| mirBase accession | None |
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| Sequence |
0- GAUUCCAUGGAGCAUAUGCUC -21
Get sequence
|
|---|
| Mature sequence |
Sha-Mir-1540_3p |
| mirBase accession | MIMAT0022781 |
|---|
| Sequence |
38- ACAUGCGCUCUAUGGAAUCAC -59
Get sequence
|
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