| MirGeneDB ID | Neu-Mir-1540 |
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| Family name |
MIR-1540 (all species) |
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| Species |
Tammar Wallaby (Notamacropus eugenii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-1540
Sha-Mir-1540
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(GCA_028372415.1_mMacEug1.pri) |
CM051813.1: 616076958-616077016 [-]
UCSC
Ensembl
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| Seed |
CAUGCGC |
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Precursor
(pre-Mir +30nt flank) |
CUAGGUCAGGAAACUGAAUGUGGUGGGGGUGAUUCCAUGGAGCAUAUGCUCUGGCUCUCUGGGGAUGGACAUGCGCUCUAUGGAAUCACCCCCGCUACAUAAGUAUCUUUAUAGUAAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUAGGUCAGGAAACUGA--| A CU UGGCUCU
AUGUGGUGGGGGUGAUUCCAUGGAGC UAUG C \
UACAUCGCCCCCACUAAGGUAUCUCG GUAC G C
GAAAUGAUAUUUCUAUGAA^ C AG UAGGGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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| Star sequence |
Neu-Mir-1540_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAUUCCAUGGAGCAUAUGCUC -21
Get sequence
|
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| Mature sequence |
Neu-Mir-1540_3p |
| mirBase accession | None |
|---|
| Sequence |
38- ACAUGCGCUCUAUGGAAUCAC -59
Get sequence
|
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