MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-12355

Family name MIR-12355 (all species)
Seed CGGAGGU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Mdo-Mir-12355 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL849755.1: 1249930-1249988 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCCUGGCUGUGGCUUGGACUAGAUGGCUGCGGAGGUCCGUUUCCACUCUGAAGUUAUGUGAUUCAGAGCUGGAAUGGACCUCAGAGGCCAUCUAGUCCCAUCUCCUCUUUGCACAGA
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Structure
        10          20        30        40         50         
GUUCCUGGCUGUGGCUU--|            GCG          U   -     AAGUUA 
                   GGACUAGAUGGCU   GAGGUCCGUU CCA CUCUG      \
                   CCUGAUCUACCGG   CUCCAGGUAA GGU GAGAC      U
AGACACGUUUCUCCUCUAC^            AGA          -   C     UUAGUG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-12355_5p

mirBase accessionNone
Sequence
0- GCGGAGGUCCGUUUCCACUCUG -22
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Star sequence

Sha-Mir-12355_3p*

mirBase accessionNone
Sequence
37- GAGCUGGAAUGGACCUCAGAGG -59
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