MirGeneDB 2.1

MirGeneDB ID

Pmi-Mir-2005

Family name MIR-2005 (all species)
Seed GUCCAAU
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-2005
Paralogues
Orthologues Spu-Mir-2005 
Node of Origin (locus) Eleutherozoa
Node of Origin (family) Eleutherozoa
Genome context
(Pmin1)
JH777837.1: 23108-23169 [+]
Precursor
(pre-Mir +30nt flank)
UCGACAUGGAACUCUUUCAAUAUCAGGUGAAGUCCAAUAGGGAGGGCAUCGCAGGUGAUUGACAAGCACUGCGGUCCAACCUAUUGGUCAAUACCUGGUCACAUGACACAUCGGAGGCGGGG
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Structure
        10        20          30        40        50        60 
UCGACAUGGAACUCUUUCAAU--|       AAGU        GA    AU     GUGAUU 
                       AUCAGGUG    CCAAUAGG  GGGC  CGCAG      G
                       UGGUCCAU    GGUUAUCC  CCUG  GCGUC      A
GGGGCGGAGGCUACACAGUACAC^       AACU        AA    --     ACGAAC 
120       110       100        90        80          70
Deep sequencing
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CommentAlthough there is no star recorded for Mir-2005 expression of the 5p arm is deeply conserved across eleutherozoan echinoderms.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Mature sequence

Pmi-Mir-2005_5p

mirBase accessionMIMAT0032178
Sequence
0- AGUCCAAUAGGGAGGGCAUCGCAG -24
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Star sequence

Pmi-Mir-2005_3p* (predicted)

mirBase accessionNone
Sequence
40- GCGGUCCAACCUAUUGGUCAAU -62
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