| MirGeneDB ID | Pma-Mir-196-o2 |
|---|
| Family name |
MIR-196 (all species) |
|---|
| Species |
Sea Lamprey (Petromyzon marinus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pma-Mir-196-o1
Pma-Mir-196-o3
|
|---|
| Orthologues |
Cin-Mir-196
|
|---|
| Node of Origin (locus) |
P. marinus
|
|---|
| Node of Origin (family) |
Olfactores
|
|---|
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046070.1: 1095082-1095141 [+]
UCSC
Ensembl
|
|---|
| Seed |
AGGUAGU |
|---|
Precursor
(pre-Mir +30nt flank) |
CGCAGACCGACACAACGACUGCUCGUGGUGUAGGUAGUUUCAUGUUGUUGGGAAUGUGUCCAAAUACUCGACAGCAGGAAACUGCCCGCACUACGUCAGUCGCCGCAGCUCCAGGGCAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGCAGACCGACACAACG---| CU UA A AAUGUG
ACUG CGUGGUG GGUAGUUUC UGUUGUUGGG U
UGAC GCAUCAC CCGUCAAAG ACGACAGCUC C
GGACGGGACCUCGACGCCGC^ U- GC G AUAAAC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Pma-Mir-196-o2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGGUAGUUUCAUGUUGUUGGG -22
Get sequence
|
|---|
| Star sequence |
Pma-Mir-196-o2_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CGACAGCAGGAAACUGCCCGCA -60
Get sequence
|
|---|
