| MirGeneDB ID | Pfl-Novel-3 |
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| Family name |
PFL-NOVEL-3 (all species) |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. flava
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| Node of Origin (family) |
P. flava
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Genome context
(Pfl) |
LD361500.1: 8168-8234 [-]
|
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| Seed |
CGUGUAA |
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Precursor
(pre-Mir +30nt flank) |
GUACGUCCACCUUGAAUGGGUUAUUUGCAAUCGUGUAACGGUGUAUUAUGCUGUGAUUAGUCGUUGUAAACAUCAGCAGAUACACUCUUACAUGAAUGCUAGUAACUGUAUUAUCAUCAGAGACUGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUACGUCCACCUUGAAUG--| U A C A UGAUUAGUC
GGUUAUU GCA UCGUGUAA GGUGUAUU UGCUG G
UCAAUGA CGU AGUACAUU UCACAUAG ACGAC U
AGUCAGAGACUACUAUUAUG^ U A C - UACAAAUGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Pfl-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- UCGUGUAACGGUGUAUUAUGCUG -23
Get sequence
|
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| Star sequence |
Pfl-Novel-3_3p* |
| mirBase accession | None |
|---|
| Sequence |
45- GCAGAUACACUCUUACAUGAAU -67
Get sequence
|
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