| MirGeneDB ID | Pfl-Novel-1 |
|---|
| Family name |
PFL-NOVEL-1 (all species) |
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| Species |
Ptychodera (Ptychodera flava) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. flava
|
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| Node of Origin (family) |
P. flava
|
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Genome context
(Pfl) |
LD348073.1: 223086-223149 [-]
|
|---|
| Seed |
UUCAUCU |
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Precursor
(pre-Mir +30nt flank) |
AAUCUAUUACGGUAUGUAGGUCUGAGUGGUGUUCAUCUUCACUGACUGCGCAGAUCUAUGUAAGUUGUACUGCGUGGUCAGUCUUGAUGAAAACCACUUGGGUCAAAUGUGGCAGCUGUCAGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAUCUAUUACGGUAUGUA--|GU UG G UUC UG GAUCUAUG
G C AGUGGU UUCAUC ACUGAC CGCA U
C G UCACCA AAGUAG UGACUG GCGU A
CCGACUGUCGACGGUGUAAA^UG GU A UUC GU CAUGUUGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Pfl-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GUUCAUCUUCACUGACUGCGCA -22
Get sequence
|
|---|
| Star sequence |
Pfl-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- CGUGGUCAGUCUUGAUGAAAAC -64
Get sequence
|
|---|
