| MirGeneDB ID | Pdu-Novel-3 |
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| Family name |
PDU-NOVEL-3 (all species) |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. dumerilii
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| Node of Origin (family) |
P. dumerilii
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000007.1: 5573703-5573761 [-]
Ensembl
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| Seed |
GCAGAGA |
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Precursor
(pre-Mir +30nt flank) |
GUAGAAACAAAGUGAAGAGUGGCUCUAAGUUCCAAGCACUCAUUUAGGCACAUGUUUCUUCAAAGUGUGCAGAGAUGUGUGCCUGGCGCCAGGGGUCACUCAAGUCAACAAGGAAACAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUAGAAACAAAGUGAAG--| AA U A U AG UGUUUC
AGUGGCUCU GU CCA GCAC CAUUU GCACA \
UCACUGGGG CG GGU CGUG GUAGA CGUGU U
AACAAAGGAACAACUGAAC^ AC C C U GA GAAACU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Novel-3_5p* |
| mirBase accession | None |
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| Sequence |
0- UCCAAGCACUCAUUUAGGCACA -22
Get sequence
|
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| Mature sequence |
Pdu-Novel-3_3p |
| mirBase accession | None |
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| Sequence |
37- UGCAGAGAUGUGUGCCUGGCGC -59
Get sequence
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