| MirGeneDB ID | Ovu-Mir-12565 |
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| Family name |
MIR-12565 (all species) |
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| Species |
Common octopus (Octopus vulgaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Mir-12565
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| Node of Origin (locus) |
Octopus
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| Node of Origin (family) |
Octopus
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Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
RXHP01021140.1: 38800-38857 [-]
Ensembl
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| Seed |
UCGGUCA |
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Precursor
(pre-Mir +30nt flank) |
GCCAAGAAUGGAACAUUGAAGAGCGAUUGCAUCGGUCAACAUUGGAUGUUCAUAUUCUUUUGAUAGAUGAGUCCAGUUUAACCGUUGUAAUCUUCCUCACCAGCGUCUACGGUUCCAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCCAAGAAUGGAACAUU---| A C U C C GU AUUCUU
GA GAG GAUUGCA CGGU AA AUUGGAU UCAU \
CU CUU CUAAUGU GCCA UU UGACCUG AGUA U
AACCUUGGCAUCUGCGACCA^ C - U A - -- GAUAGU
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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| Mature sequence |
Ovu-Mir-12565_5p |
| mirBase accession | None |
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| Sequence |
0- AUCGGUCAACAUUGGAUGUUCAUAU -25
Get sequence
|
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| Star sequence |
Ovu-Mir-12565_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AUGAGUCCAGUUUAACCGUUGU -58
Get sequence
|
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