| MirGeneDB ID | Obi-Mir-12565 |
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| Family name |
MIR-12565 (all species) |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Ovu-Mir-12565
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Octopus
|
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Genome context
(PRJNA270931_OBI) |
KQ423484: 93245-93302 [-]
Ensembl
|
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| Seed |
UCGGUCA |
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Precursor
(pre-Mir +30nt flank) |
GCCAAGAAUGGAACAUUGAAGAGCGAUUGCAUCGGUCAACAUUGGAUGUUCAUAUUCUUUUGAUAGAUGAGUCCAGUUUAACCGUUGUAAUCUUCCUCACCAGCAUCUACAGUUCCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCCAAGAAUGGAACAUU---| A C U C C GU AUUCUU
GA GAG GAUUGCA CGGU AA AUUGGAU UCAU \
CU CUU CUAAUGU GCCA UU UGACCUG AGUA U
AACCUUGACAUCUACGACCA^ C - U A - -- GAUAGU
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12565_5p |
| mirBase accession | None |
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| Sequence |
0- AUCGGUCAACAUUGGAUGUUCAUAU -25
Get sequence
|
|---|
| Star sequence |
Obi-Mir-12565_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AUGAGUCCAGUUUAACCGUUGU -58
Get sequence
|
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