MirGeneDB 2.1

MirGeneDB ID

Ocu-Novel-1

Family name OCU-NOVEL-1 (all species)
Seed AUGAUUG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) O. cuniculus
Node of Origin (family) O. cuniculus
Genome context
(oryCun2_add)
chrUn0033: 388968-389026 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Novel-1)
Mir-105-P1 chrUn0033: 388180-388238 [+] UCSC Ensembl
Mir-105-P2 chrUn0033: 390331-390389 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUCAGGAUGUCUGGGUGUACAUCAUGGUGAAAUGCUCAAACAUCAGUGGUAGUUGUUCAUGCACCAUGAUUGUCUGAGCAUAUGCCAUGAUAUCCCCUCUAGCAUCACUGUCAUAU
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Structure
        10        20          30        40        50         
UUUCUCAGGAUGUCUGGGUGUAC--|       GAA       A   UCA     AGUUG 
                         AUCAUGGU   AUGCUCA ACA   GUGGU     U
                         UAGUACCG   UACGAGU UGU   UACCA     U
UAUACUGUCACUACGAUCUCCCCUA^       UA-       C   UAG     CGUAC 
       110       100        90         80        70        60
Deep sequencing
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CommentThis is offset from mir-767 which is not accepted but this appears to be a bona fide miRNA.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Novel-1_5p*

mirBase accessionNone
Sequence
0- UGAAAUGCUCAAACAUCAGUGGU -23
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Mature sequence

Ocu-Novel-1_3p

mirBase accessionNone
Sequence
37- CAUGAUUGUCUGAGCAUAUGCC -59
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