MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-505-v2

Family name MIR-505 (all species)
Seed UCAACAC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-505
Paralogues Ocu-Mir-505-v1 
Orthologues Bta-Mir-505-v2  Cfa-Mir-505-v2  Cpo-Mir-505-v2  Dno-Mir-505-v2  Ete-Mir-505-v2  Hsa-Mir-505-v2  Mml-Mir-505-v2  Mmu-Mir-505-v2  Rno-Mir-505-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0002: 3182537-3182595 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-505-v2)
Mir-505-v1 chrUn0002: 3182537-3182595 [-] UCSC Ensembl
Mir-505-v2 chrUn0002: 3182537-3182595 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCGGUGGUAAAUUGAUGCACCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACACUUGCUGGUUUCCUCUUUGGAGCAUCACCAAAUUCGUGGAUUAUC
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Structure
        10           20        30        40        50         
CUGCCGGUGGUAAAUUG---|   AC    U           G    A       UUCUGC 
                    AUGC  CCAG GGGGGAGCCAG AAGU UUGAUGU      \
                    UACG  GGUU CUCCUUUGGUC UUCA AACUGCG      C
CUAUUAGGUGCUUAAACCAC^   A-    U           G    C       AUUUGA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-505-v2_5p*

mirBase accessionMIMAT0048503
Sequence
0- GGGAGCCAGGAAGUAUUGAUGU -22
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Mature sequence

Ocu-Mir-505-v2_3p

mirBase accessionMIMAT0048504
Sequence
37- GUCAACACUUGCUGGUUUCCUC -59
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