| MirGeneDB ID | Ocu-Mir-350 |
|---|
| Family name |
MIR-350 (all species) |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
ocu-mir-350
|
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| Paralogues |
|
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| Orthologues |
Cfa-Mir-350
Cpo-Mir-350
Eca-Mir-350
Ete-Mir-350
Laf-Mir-350
Mmr-Mir-350
Mmu-Mir-350
Rno-Mir-350-P1
Rno-Mir-350-P2
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
chr16: 24307027-24307087 [+]
UCSC
Ensembl
|
|---|
| Seed |
UCACAAA |
|---|
Precursor
(pre-Mir +30nt flank) |
AAAACAAAAAAUAUUUGCUCCUACAAGAGUAAAGUGCAUGCGCUUUGGGACAGUGAGGAAAAUAAUGUUCACAAAGCCCAUACACUUUUACCCUUUGGGAGAGUUGCAGCUUCUUUUGGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAACAAAAAAUAUUUG--- C A - C C -| GUGAGG
CUCCUA AAG GU AAAGUG AUG GCUUUG GGACA \
GAGGGU UUC CA UUUCAC UAC CGAAAC CUUGU A
ACGGUUUUCUUCGACGUUGA - C U A C A^ AAUAAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-350_5p* |
| mirBase accession | MIMAT0048391 |
|---|
| Sequence |
0- AAAGUGCAUGCGCUUUGGGACA -22
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-350_3p |
| mirBase accession | MIMAT0048392 |
|---|
| Sequence |
37- UUCACAAAGCCCAUACACUUUUAC -61
Get sequence
|
|---|
