MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-12093

Family name MIR-12093 (all species)
Seed CAGCCCC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-12093
Paralogues
Orthologues
Node of Origin (locus) O. cuniculus
Node of Origin (family) O. cuniculus
Genome context
(oryCun2_add)
chrUn0033: 727960-728017 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12093)
Mir-452-v1 chrUn0033: 726712-726772 [+] UCSC Ensembl
Mir-452-v2 chrUn0033: 726715-726771 [+] UCSC Ensembl
Mir-224 chrUn0033: 727743-727810 [+] UCSC Ensembl
Mir-12093 chrUn0033: 727960-728017 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGUCUUGAAUCAUGGUUUCUCCAGUGUCAGAGCUACCUCUGGGACUGGUUUCAAACUCUUCUAGUCAGCCCCUGGGGUAGUUCUGACUGGAGCAGACUUAUGUAUUCAUCCCCAAG
Get precursor sequence
Structure
        10           20         30        40        50        
CUCGUCUUGAAUCAUGG---   -|    GU              U   A   GU UCAAA 
                    UUU CUCCA  GUCAGAGCUACCUC GGG CUG  U     C
                    AGA GAGGU  CAGUCUUGAUGGGG CCC GAC  A     U
GAACCCCUACUUAUGUAUUC   C^    --              U   C   UG UCUUC 
      110       100        90          80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-12093_5p*

mirBase accessionMIMAT0048625
Sequence
0- AGAGCUACCUCUGGGACUGGUU -22
Get sequence
Mature sequence

Ocu-Mir-12093_3p

mirBase accessionMIMAT0048626
Sequence
36- UCAGCCCCUGGGGUAGUUCUGA -58
Get sequence