MirGeneDB 3.0

MirGeneDB ID

Obi-Mir-12568

Family name MIR-12568 (all species)
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues Obi-Mir-12568-v1 
Orthologues
Node of Origin (locus) Octopus
Node of Origin (family) Octopus
Genome context
(PRJNA270931_OBI)
KQ426666: 108507-108564 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-12568-v2)
Mir-12568-v2 KQ426666: 108507-108564 [-] Ensembl
Mir-12568-v1 KQ426666: 108508-108563 [-] Ensembl
Variant

Obi-Mir-12568-v2

Seed UCUGAGU
Precursor
(pre-Mir +30nt flank)
UUCCAAAGGUAUAGUUUACCGUAAAAAUGUUUCUGAGUUCCUCAGUCAGUGAAAUAUGCCAAUGCACUGAUUGGAGAAGGCAGAAAACAUUAUUAUGGAAUUUUGACGUAAACCAACU
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Structure
        10          20         30        40        50        
UUCCAAAGGUAUAGUUUA--      A    -|     AG   CU         AAAUAU 
                    CCGUAA AAUG UUUCUG  UUC  CAGUCAGUG      \
                    GGUAUU UUAC AAAGAC  AAG  GUUAGUCAC      G
UCAACCAAAUGCAGUUUUAA      A    A^     GG   AG         GUAACC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Obi-Mir-12568-v2_5p

mirBase accessionNone
Sequence
0- UUCUGAGUUCCUCAGUCAGUG -21
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Star sequence

Obi-Mir-12568-v2_3p*

mirBase accessionNone
Sequence
35- ACUGAUUGGAGAAGGCAGAAAAC -58
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Variant

Obi-Mir-12568-v1

Seed CUGAGUU
Precursor
(pre-Mir +30nt flank)
UCCAAAGGUAUAGUUUACCGUAAAAAUGUUUCUGAGUUCCUCAGUCAGUGAAAUAUGCCAAUGCACUGAUUGGAGAAGGCAGAAAACAUUAUUAUGGAAUUUUGACGUAAACCAAC
Get precursor sequence
Structure
        10          20         30        40        50       
UCCAAAGGUAUAGUUUA--      A    -|     AG   CU         AAAUAU 
                   CCGUAA AAUG UUUCUG  UUC  CAGUCAGUG      \
                   GGUAUU UUAC AAAGAC  AAG  GUUAGUCAC      G
CAACCAAAUGCAGUUUUAA      A    A^     GG   AG         GUAACC 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Obi-Mir-12568-v1_5p

mirBase accessionNone
Sequence
0- UCUGAGUUCCUCAGUCAGUGA -21
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Star sequence

Obi-Mir-12568-v1_3p*

mirBase accessionNone
Sequence
33- CACUGAUUGGAGAAGGCAGAAAA -56
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