MirGeneDB ID | Obi-Mir-12559-P1 |
Family name |
MIR-12559 (all species) |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-12559-P2
|
Orthologues |
Ovu-Mir-12559-P1
|
Node of Origin (locus) |
Octopus
|
Node of Origin (family) |
Octopus
|
Genome context (PRJNA270931_OBI) |
KQ415882: 267322-267380 [-]
Ensembl
|
Seed |
GCUGGAA |
Precursor (pre-Mir +30nt flank) |
GCAAUAUCUAAAUAUGAGGUGUCCACUGAAUGCUGGAAGACGGGUAAUGGGUGUACAAUACUGGAGCACCCAAUCAGUCGUCCAACAUCCAGAGGAUUCUGCGCUACUCCGAAUGAGAA
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|
Structure | 10 20 30 40 50
GCAAUAUCUAAAUAUGA--| U A A C A G AA ACAAU
GG GUCC CUG AUG UGGA GAC GGU UGGGUGU \
UC UAGG GAC UAC ACCU CUG CUA ACCCACG A
AAGAGUAAGCCUCAUCGCG^ U A C A G A -- AGGUC
110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Obi-Mir-12559-P1_5p |
mirBase accession | None |
Sequence |
0- UGCUGGAAGACGGGUAAUGGGUGU -24
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|
Star sequence |
Obi-Mir-12559-P1_3p* |
mirBase accession | None |
Sequence |
37- ACCCAAUCAGUCGUCCAACAUC -59
Get sequence
|