MirGeneDB ID | Obi-Mir-12552 |
Family name |
MIR-12552 (all species) |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Esc-Mir-12552
Ovu-Mir-12552
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (PRJNA270931_OBI) |
KQ417010: 96312-96369 [-]
Ensembl
|
Seed |
AAAAUUC |
Precursor (pre-Mir +30nt flank) |
UGUCUUCAUUUAUUAAUUGUAGCGCAGUCCUAAAAUUCAAGUCUGAGGGUUCGUUUAUUAAAUUGAACUUUCUCACUUGAAAUUUUGGCCUUCUCUAUCAACAUGCAGCACACAUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCUUCAUUUAUUAAUU--| CGC U U A CU UUUA
GUAG AG CC AAA UUCAAGU GAGGGUUCG U
UAUC UC GG UUU AAGUUCA CUUUCAAGU U
AACUACACACGACGUACAAC^ UCU C U A CU UAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Obi-Mir-12552_5p |
mirBase accession | None |
Sequence |
0- UAAAAUUCAAGUCUGAGGGUUCG -23
Get sequence
|
Star sequence |
Obi-Mir-12552_3p* |
mirBase accession | None |
Sequence |
35- AACUUUCUCACUUGAAAUUUUGG -58
Get sequence
|