MirGeneDB 3.0

MirGeneDB ID

Obi-Mir-12499

Family name MIR-12499 (all species)
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues
Orthologues Esc-Mir-12499  Npo-Mir-12499  Ovu-Mir-12499 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(PRJNA270931_OBI)
KQ432306: 5515-5573 [+] Ensembl
Seed ACACCCG
Precursor
(pre-Mir +30nt flank)
GAACGACAGCAAAUUCUAUGAUUGUUGCCGAACACCCGAGUGAGCGGCUGAGGAUUAAAAUACAUACCGAGCCCUUACGAGGGUGUUCGGCAACAGUUGACUAUCACAAGAUCUGUCGA
Get precursor sequence
Structure
        10          20        30        40        50          
GAACGACAGCAAAUUCUAU--|                 GA     C    GA  AUUAAA 
                     GAUUGUUGCCGAACACCC  GUGAG GGCU  GG      \
                     UUGACAACGGCUUGUGGG  CAUUC CCGA  CC      A
AGCUGUCUAGAACACUAUCAG^                 AG     -    G-  AUACAU 
       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Obi-Mir-12499_5p

mirBase accessionNone
Sequence
0- AACACCCGAGUGAGCGGCUGAGGA -24
Get sequence
Star sequence

Obi-Mir-12499_3p*

mirBase accessionNone
Sequence
37- CGAGCCCUUACGAGGGUGUUCG -59
Get sequence