MirGeneDB ID | Obi-Mir-12499 |
Family name |
MIR-12499 (all species) |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Esc-Mir-12499
Npo-Mir-12499
Ovu-Mir-12499
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (PRJNA270931_OBI) |
KQ432306: 5515-5573 [+]
Ensembl
|
Seed |
ACACCCG |
Precursor (pre-Mir +30nt flank) |
GAACGACAGCAAAUUCUAUGAUUGUUGCCGAACACCCGAGUGAGCGGCUGAGGAUUAAAAUACAUACCGAGCCCUUACGAGGGUGUUCGGCAACAGUUGACUAUCACAAGAUCUGUCGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GAACGACAGCAAAUUCUAU--| GA C GA AUUAAA
GAUUGUUGCCGAACACCC GUGAG GGCU GG \
UUGACAACGGCUUGUGGG CAUUC CCGA CC A
AGCUGUCUAGAACACUAUCAG^ AG - G- AUACAU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Obi-Mir-12499_5p |
mirBase accession | None |
Sequence |
0- AACACCCGAGUGAGCGGCUGAGGA -24
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|
Star sequence |
Obi-Mir-12499_3p* |
mirBase accession | None |
Sequence |
37- CGAGCCCUUACGAGGGUGUUCG -59
Get sequence
|