| MirGeneDB ID | Mgi-Novel-6 |
|---|
| Family name |
MGI-NOVEL-6 (all species) |
|---|
| Species |
Pacific oyster (Magallana gigas) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. gigas
|
|---|
| Node of Origin (family) |
C. gigas
|
|---|
Genome context
(CGI_GCA_000297895.1) |
scaffold43364: 108910-108968 [+]
Ensembl
|
|---|
| Seed |
GUGGUGC |
|---|
Precursor
(pre-Mir +30nt flank) |
ACACGUUUGUCAUCCAUGGAAGAAUACACCAGUGGUGCUCAUUUGUCGAAACUGUAAAUAGCCUCAGUUUUGCAUCUGUGUAUUCCUGGUGAAAGAUUAACAUCCGACACGGUUAAUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACACGUUUGUCAUCCAUGGAAGAAUA--| UG U UU U GUAAA
CACCAG GUGC CA UG CGAAACU U
GUGGUC UAUG GU AC GUUUUGA A
AAUAAUUGGCACAGCCUACAAUUAGAAA^ CU U CU - CUCCG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Mgi-Novel-6_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGUGCUCAUUUGUCGAAACU -23
Get sequence
|
|---|
| Star sequence |
Mgi-Novel-6_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UUUUGCAUCUGUGUAUUCCUGG -59
Get sequence
|
|---|
