| MirGeneDB ID | Loc-Mir-727-P3-v2 |
|---|
| Family name |
MIR-727 (all species) |
|---|
| Seed |
UUGAGGC |
|---|
| Species |
Spotted gar (Lepisosteus oculatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Loc-Mir-727-P3-v1
Loc-Mir-727-P4-v1
Loc-Mir-727-P4-v2
|
|---|
| Orthologues |
Spt-Mir-727
|
|---|
| Node of Origin (locus) |
L. oculatus
|
|---|
| Node of Origin (family) |
Osteichthyes
|
|---|
Genome context
(LepOcu1) |
LG14: 8060650-8060711 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGGGGAAUUAAUGUCCUGUAUGUCAUUUUCAGUCUUCAAUUCCUCCCAGCCCGUGUUAUGGAAUUACUGAGUUGAGGCGAGUUGAAGACUAAAAAUGCUGUACAGAUUCAAGCACAACUAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGGGGAAUUAAUGUCCU--| U C CU - CCGUGUUAU
GUAUG CAUUUU AGUCUUCAAUUC CC CAGC G
CAUGU GUAAAA UCAGAAGUUGAG GG GUUG G
AAAUCAACACGAACUUAGA^ C A C- A AGUCAUUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), UGUG in loop |
|---|
Tissue expression
|
| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Loc-Mir-727-P3-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUCUUCAAUUCCUCCCAGCCC -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-727-P3-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GUUGAGGCGAGUUGAAGACUAA -62
Get sequence
|
|---|
