MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-430-o31

Family name MIR-430 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-430-o32 
Orthologues Hsa-Mir-430-P31a  Hsa-Mir-430-P31b  Mml-Mir-430-P31  Pab-Mir-430-P31a  Pab-Mir-430-P31b 
Node of Origin (locus) L. oculatus
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG7: 14528433-14528491 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-430-o31)
Mir-430-o32 LG7: 14528223-14528281 [-] Ensembl
Mir-430-o31 LG7: 14528433-14528491 [-] Ensembl
Seed AAGUGCU
Precursor
(pre-Mir +30nt flank)
UAAGACUAUGCAAAAUGACACGUUCAGGCCCCUUCAAAGUGAAGCACUUGCUUGGAAUACCUGCAUGUAAGUGCUUAGUUUUGGAGUAGCUUUUAUGGGGUACAACAGAUCCAACGCGA
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Structure
        10         20         30        40        50         
UAAGACUAUGCAAAAUG-  A-|  UC    CC        UG          UUGGAAU 
                  AC  CGU  AGGC  CUUCAAAG  AAGCACUUGC       \
                  UG  GUA  UUCG  GAGGUUUU  UUCGUGAAUG       A
AGCGCAACCUAGACAACA  GG^  UU    AU        GA          UACGUCC 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-430-o31_5p*

mirBase accessionNone
Sequence
0- CCUUCAAAGUGAAGCACUUGCU -22
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Mature sequence

Loc-Mir-430-o31_3p

mirBase accessionNone
Sequence
37- UAAGUGCUUAGUUUUGGAGUAG -59
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