MirGeneDB ID | Loc-Mir-430-o31 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-430-o32
|
Orthologues |
Hsa-Mir-430-P31a
Hsa-Mir-430-P31b
Mml-Mir-430-P31c
Mml-Mir-430-P31d
|
Node of Origin (locus) |
L. oculatus
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Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG7: 14528433-14528491 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAGACUAUGCAAAAUGACACGUUCAGGCCCCUUCAAAGUGAAGCACUUGCUUGGAAUACCUGCAUGUAAGUGCUUAGUUUUGGAGUAGCUUUUAUGGGGUACAACAGAUCCAACGCGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UAAGACUAUGCAAAAUG- A-| UC CC UG UUGGAAU
AC CGU AGGC CUUCAAAG AAGCACUUGC \
UG GUA UUCG GAGGUUUU UUCGUGAAUG A
AGCGCAACCUAGACAACA GG^ UU AU GA UACGUCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-430-o31_5p* |
mirBase accession | None |
Sequence |
0- CCUUCAAAGUGAAGCACUUGCU -22
Get sequence
|
Mature sequence |
Loc-Mir-430-o31_3p |
mirBase accession | None |
Sequence |
37- UAAGUGCUUAGUUUUGGAGUAG -59
Get sequence
|