| MirGeneDB ID | Llo-Novel-3 |
|---|
| Family name |
LLO-NOVEL-3 (all species) |
|---|
| Species |
Bootlace worm (Lineus longissimus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
Lineidae
|
|---|
| Node of Origin (family) |
Lineidae
|
|---|
Genome context
(GCA_910592395.2_tnLinLong1) |
OU342998.1: 9077011-9077071 [+]
Ensembl
|
|---|
| Seed |
CAAUAUC |
|---|
Precursor
(pre-Mir +30nt flank) |
ACAUGACCGUAGAUCAUCUGGCCUGGGUGUCAGGCAUUCUAGAUAUGACUAUGAUUGAUAAACGCCAUAGCAAUAUCAUGAAUGCCUGGGCAUCCAGGUCUAGGAUUCGCAACCGCCGAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAUGACCGUAGAUCAU- - -| UA GA UGAUUGA
CUGG CCUGGGUG UCAGGCAUUC GAUAU CUA U
GAUC GGACCUAC GGUCCGUAAG CUAUA GAU A
AGAGCCGCCAACGCUUAG U G^ UA AC ACCGCAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Llo-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGGCAUUCUAGAUAUGACUA -21
Get sequence
|
|---|
| Mature sequence |
Llo-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GCAAUAUCAUGAAUGCCUGGGC -61
Get sequence
|
|---|
