| MirGeneDB ID | Hvu-Mir-3007-v2 |
|---|
| Family name |
MIR-3007 (all species) |
|---|
| Seed |
UGUUCGG |
|---|
| Species |
Freshwater-polyp (Hydra vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Hvu-Mir-3007-v1
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
H. vulgaris
|
|---|
| Node of Origin (family) |
H. vulgaris
|
|---|
Genome context
(Hm105_1.0) |
Sc4wPfr_3789: 111109-111161 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAGUGACUUACUUAUUAACUUUGUGUCAACAUGUUCGGCGUUUUUACCUGCAGUGUAACUGUGGGUAAAAACGCCAAACAUGUUGACAAAAGCUGUUAUUUGUACGGAUUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAGUGACUUACUUAUUAA---| G C UG GUG
CUUU UGUCAACAUGUU GGCGUUUUUACC CA \
GAAA ACAGUUGUACAA CCGCAAAAAUGG GU U
AUUUUAGGCAUGUUUAUUGUC^ - A GU CAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Hvu-Mir-3007-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUGUUCGGCGUUUUUACCUGCA -22
Get sequence
|
|---|
| Star sequence |
Hvu-Mir-3007-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
31- UGGGUAAAAACGCCAAACAUGU -53
Get sequence
|
|---|
