MirGeneDB ID | Hvu-Mir-2030 |
Family name |
MIR-2030 (all species) |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Adi-Mir-2030
Asp-Mir-2030
Nve-Mir-2030
|
Node of Origin (locus) |
Cnidaria
|
Node of Origin (family) |
Cnidaria
|
Genome context (Hm105_1.0) |
Sc4wPfr_484: 3271194-3271244 [+]
|
Seed |
AGCAUAA |
Precursor (pre-Mir +30nt flank) |
AAGCAAGACGAAUCUUGUCUAUUCCCAGGGUAGCAUAACAUUGUAAGAAACAUUUAUUGCGUCUUACACUGCUGUGCUACCCAGGGUAGCAAGCAAUGUUCCCAUGUAUGA
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|
Structure | 10 20 30 40 50
AAGCAAGACGAAUCUUGUCUAUU--| A A U AA UU
CCC GGGUAGCAUA CA UGUAAGA CA \
GGG CCCAUCGUGU GU ACAUUCU GU U
AGUAUGUACCCUUGUAACGAACGAU^ A C C GC UA
. 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hvu-Mir-2030_5p |
mirBase accession | None |
Sequence |
0- UAGCAUAACAUUGUAAGAAACA -22
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|
Star sequence |
Hvu-Mir-2030_3p* |
mirBase accession | None |
Sequence |
29- CGUCUUACACUGCUGUGCUACC -51
Get sequence
|