| MirGeneDB ID | Hvu-Mir-2022 |
|---|
| Family name |
MIR-2022 (all species) |
|---|
| Seed |
UUGCUAG |
|---|
| Species |
Freshwater-polyp (Hydra vulgaris) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Nve-Mir-2022
|
|---|
| Node of Origin (locus) |
Cnidaria
|
|---|
| Node of Origin (family) |
Cnidaria
|
|---|
Genome context
(Hm105_1.0) |
Sc4wPfr_1152: 1121872-1121927 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACAAGCUUUAUUCAAAAAACGAAAUCUGGAGACGAAGACAGCUGGCAAAUAUUUUUACAGUAUUUGCUAGUUGCUUUUGUCCCCUGAUUAUUUAUUAAAAAUAAGUUUAUGCGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACAAGCUUUAUUCAAAAAACGA---| U A GA UUUU
AAUC GG GACGAA CAGCUGGCAAAUA \
UUAG CC CUGUUU GUUGAUCGUUUAU U
GAGCGUAUUUGAAUAAAAAUUAUUUA^ U C UC GACA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Hvu-Mir-2022_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGACGAAGACAGCUGGCAAAUA -22
Get sequence
|
|---|
| Mature sequence |
Hvu-Mir-2022_3p |
| mirBase accession | None |
|---|
| Sequence |
33- UUUGCUAGUUGCUUUUGUCCCCU -56
Get sequence
|
|---|
