MirGeneDB 2.1

MirGeneDB ID

Hvu-Mir-2022

Family name MIR-2022 (all species)
Seed UUGCUAG
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues Nve-Mir-2022 
Node of Origin (locus) Cnidaria
Node of Origin (family) Cnidaria
Genome context
(Hm105_1.0)
Sc4wPfr_1152: 1121872-1121927 [+]
Precursor
(pre-Mir +30nt flank)
CACAAGCUUUAUUCAAAAAACGAAAUCUGGAGACGAAGACAGCUGGCAAAUAUUUUUACAGUAUUUGCUAGUUGCUUUUGUCCCCUGAUUAUUUAUUAAAAAUAAGUUUAUGCGAG
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Structure
        10        20           30        40        50       
CACAAGCUUUAUUCAAAAAACGA---|   U  A      GA             UUUU 
                          AAUC GG GACGAA  CAGCUGGCAAAUA    \
                          UUAG CC CUGUUU  GUUGAUCGUUUAU    U
GAGCGUAUUUGAAUAAAAAUUAUUUA^   U  C      UC             GACA 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
1_ 2_ 3_ 3_ Un
Star sequence

Hvu-Mir-2022_5p*

mirBase accessionNone
Sequence
0- AGACGAAGACAGCUGGCAAAUA -22
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Mature sequence

Hvu-Mir-2022_3p

mirBase accessionNone
Sequence
33- UUUGCUAGUUGCUUUUGUCCCCU -56
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