MirGeneDB ID | Asp-Mir-2022-P1a |
Family name |
MIR-2022 (all species) |
Species |
Deep-sea anemone (Actinernus sp.) |
MiRBase ID |
|
Paralogues |
Asp-Mir-2022-P1b
Asp-Mir-2022-P1c
|
Orthologues |
Adi-Mir-2022
Hvu-Mir-2022
Nve-Mir-2022
|
Node of Origin (locus) |
Actinernus sp.
|
Node of Origin (family) |
Cnidaria
|
Genome context (GCA_030867875.1_CUHK_Acti_1.0_genomic) |
JAOWCC010000655.1: 6435816-6435867 [-]
Ensembl
|
Seed |
UUGCUAG |
Precursor (pre-Mir +30nt flank) |
AGCGGUGAUCCUAAUUUUCACCCAAAAGGCGGGAUGAAACAACUACCAAGUGUUUACCAUUUGCUAGUUGCUUUUGUCCCGCCUUUUAGGGGAGCUAUGCCAAAGGCCCGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCGGUGAUCCUAAUUU-- A - UG -| C UU
UC CCC AAAAGGCGGGA AAA CAACUA CAAGUG \
AG GGG UUUUCCGCCCU UUU GUUGAU GUUUAC U
GGGCCCGGAAACCGUAUCG - A GU C^ C CA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Asp-Mir-2022-P1a_5p* |
mirBase accession | None |
Sequence |
0- GGGAUGAAACAACUACCAAGUG -22
Get sequence
|
Mature sequence |
Asp-Mir-2022-P1a_3p |
mirBase accession | None |
Sequence |
29- UUUGCUAGUUGCUUUUGUCCCGC -52
Get sequence
|