| MirGeneDB ID | Hru-Novel-1 |
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| Family name |
HRU-NOVEL-1 (all species) |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
H. rufescens
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| Node of Origin (family) |
H. rufescens
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000055.1: 1701472-1701529 [-]
UCSC
Ensembl
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| Seed |
UUUUUAC |
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Precursor
(pre-Mir +30nt flank) |
AAGAGAAAGGAAGAUCACGUGACAUCUCCCCUAGGUCACGUGUAAGACGGUAAGAAAUGAUUGGACCUUUUUACAUGUGACUUAGGGAGGCUGUAACGGUACUUCAACACGGAGAAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAGAGAAAGGAAGAUCA---| G U UC C AAGAAA
CGU ACA C CCCUAGGUCACGUGUAAGA GGU \
GCA UGU G GGGAUUCAGUGUACAUUUU CCA U
AUAAGAGGCACAACUUCAUG^ A C GA U GGUUAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Hru-Novel-1_5p* |
| mirBase accession | None |
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| Sequence |
0- CUAGGUCACGUGUAAGACGGU -21
Get sequence
|
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| Mature sequence |
Hru-Novel-1_3p |
| mirBase accession | None |
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| Sequence |
36- CUUUUUACAUGUGACUUAGGGA -58
Get sequence
|
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