| MirGeneDB ID | Hru-Mir-12588 |
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| Family name |
MIR-12588 (all species) |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Lgi-Mir-12588
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| Node of Origin (locus) |
Gastropoda
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| Node of Origin (family) |
Gastropoda
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
gb|JALGQB010000184.1|:58662-58925: 102-160 [-]
UCSC
Ensembl
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| Seed |
GUGAUAG |
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Precursor
(pre-Mir +30nt flank) |
UGCUACAAGAUAAGUUUGUUCCUGCUGUUGUGUGAUAGAUGCUGCAUUUGCUGGCUGCAAGAACGAGUAAAUGCAUCCUCUAUUACCCACACAGCCGGAGCACUGCAUCGACUAUUAUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGCUACAAGAUAAGUUU- U - U UGC -|GCUG
GUUCC GCUGU UG GUGAUAGA UGCAUUUGCU G C
CGAGG CGACA AC CAUUAUCU ACGUAAAUGA C A
CUAUUAUCAGCUACGUCA C C C CCU G^AAGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Hru-Mir-12588_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGUGAUAGAUGCUGCAUUUGCUG -23
Get sequence
|
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| Star sequence |
Hru-Mir-12588_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
36- GUAAAUGCAUCCUCUAUUACCCA -59
Get sequence
|
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