MirGeneDB ID | Gsa-Novel-1 |
Family name |
GSA-NOVEL-1 (all species) |
Species |
Russian doll killer (Gyrodactylus salaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
G. salaris
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Node of Origin (family) |
G. salaris
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Genome context (gyrodactylus_salaris.PRJNA244375.WBPS19.genomic) |
scf7180006950188: 19757-19956 [+]
UCSC
Ensembl
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Seed |
AAGAUGG |
Precursor (pre-Mir +30nt flank) |
UGAGUUCUUCAGAAAUACUGAUCUAUCAUUGAAGAUGGAAUAAAGGGACUCCAAAUCGACGGAAUAGUAAUAAUUGUAACAAUGGGGGUUUUGACAAUACGAUUGGUUGGAUCAUUCCCUUCUUCAGUUGUCUUUGAGAAGGUUGAAAGUCAGAGGGAGAUUUAUCCAAACAUCAAAAGCCCCCAUUGUUAUUAUUCCAACGAUUGGGAUUCACUUGUUUCCAUCUCGAAUGGUGUUCAAAGAAACUUCCCUAUUGUACA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90 100 110 120
UGAGUUCUUCAGAAAUAC---| UC GA UA - CU CAAAUCGACGGAAUAGUAAUAAUUGUAACAAUGGGGGUUUUGACAAUACGAUUGGUUGGAUCAUUCCCUUCUUCAGU
UGA UAUCAUU AGAUGGAA AAG GGA C \
ACU GUGGUAA UCUACCUU UUC CUU G U
ACAUGUUAUCCCUUCAAAGAA^ U- GC UG A AG GUUAGCAACCUUAUUAUUGUUACCCCCGAAAACUACAAACCUAUUUAGAGGGAGACUGAAAGUUGGAAGAGUUUCUG
. 250 240 230 220 210 200 190 180 170 160 150 140 130 |
Deep sequencing |
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
|
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Mature sequence |
Gsa-Novel-1_5p |
mirBase accession | None |
Sequence |
0- GAAGAUGGAAUAAAGGGACUC -21
Get sequence
|
Star sequence |
Gsa-Novel-1_3p* |
mirBase accession | None |
Sequence |
179- UUCACUUGUUUCCAUCUCGAA -200
Get sequence
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