| MirGeneDB ID | Gsa-Mir-9398 |
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| Family name |
MIR-9398 (all species) |
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| Species |
Russian doll killer (Gyrodactylus salaris) |
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| MiRBase ID |
gsa-mir-9398
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. salaris
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| Node of Origin (family) |
G. salaris
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Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic) |
scf7180006949395: 12153-12222 [+]
UCSC
Ensembl
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| Seed |
UUAGAUU |
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Precursor
(pre-Mir +30nt flank) |
UUGGUGAGUUGUAAGCUAUUAGGCCAAUGAAAAGUAAUCUUUAAUCUGAUUGGUUUUCAUCGAAAUGAAGAAUAUCCAAUUAGAUUGGAGAUGGCUUCUUAUUGGUUUAAGAAUUCUUCCUUAUGAACUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUGGUGAGUUGUAAGCUA--| A A GUUUUCAUCGA
UUAGGCCAAUGA AAGU AUCUUUAAUCUGAUUG A
AAUUUGGUUAUU UUCG UAGAGGUUAGAUUAAC A
UUCAAGUAUUCCUUCUUAAG^ C G CUAUAAGAAGU
. 120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Gsa-Mir-9398_5p* |
| mirBase accession | MIMAT0035342 |
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| Sequence |
0- AAAGUAAUCUUUAAUCUGAUUG -22
Get sequence
|
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| Mature sequence |
Gsa-Mir-9398_3p |
| mirBase accession | MIMAT0035343 |
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| Sequence |
48- AUUAGAUUGGAGAUGGCUUCUU -70
Get sequence
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