| MirGeneDB ID | Gsa-Mir-9395 |
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| Family name |
MIR-9395 (all species) |
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| Species |
Russian doll killer (Gyrodactylus salaris) |
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| MiRBase ID |
gsa-mir-9395
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
G. salaris
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| Node of Origin (family) |
G. salaris
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Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic) |
scf7180006952959: 457-517 [-]
UCSC
Ensembl
|
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| Seed |
UCUUGAU |
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Precursor
(pre-Mir +30nt flank) |
UUGUAAAUAUUUGUCUCGCUCGAUUAGAAAUUCUUGAUCUUGCGAGUGAUUCCGAUGAAUAAGACAUGAAUCAUUCUCUAGAUCUGGACUGCUCUUUUAGCUUUCUCGACCACCAUCCUCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUGUAAAUAUUUGUCUC---| C UU AAAU U UGC CGAUGAA
GCU GA AG UCU GAUCU GAGUGAUUC \
CGA UU UC AGG CUAGA CUUACUAAG U
ACUCCUACCACCAGCUCUUU^ U UC GUC- U UCU UACAGAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Gsa-Mir-9395_5p |
| mirBase accession | MIMAT0035336 |
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| Sequence |
0- UUCUUGAUCUUGCGAGUGAUUC -22
Get sequence
|
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| Star sequence |
Gsa-Mir-9395_3p* |
| mirBase accession | MIMAT0035337 |
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| Sequence |
39- AUCAUUCUCUAGAUCUGGACUG -61
Get sequence
|
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