| MirGeneDB ID | Gmo-Mir-734 |
|---|
| Family name |
MIR-734 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-734
|
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| Paralogues |
|
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| Orthologues |
Dre-Mir-734
Loc-Mir-734
Mal-Mir-734
|
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| Node of Origin (locus) |
Neopterygii
|
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| Node of Origin (family) |
Neopterygii
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_2255: 264673-264732 [+]
UCSC
Ensembl
|
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| Seed |
AAAUGCU |
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Precursor
(pre-Mir +30nt flank) |
CUUCAUGCCACCUCUUUAAUUUCAAGAGCUGAACUAUUCUGCAACAUUUGUUGAUGUGGACCUGUAAGUAAAUGCUGCAGAAUUGUGCUCCUCUUGGGAUUGUUUUUCUCCGCCGCUGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUUCAUGCCACCUCUUU--| UU CUGA U A GAUGUG
AAU CAAGAG AC AUUCUGCA CAUUUGUU G
UUA GUUCUC UG UAAGACGU GUAAAUGA A
CCGUCGCCGCCUCUUUUUG^ GG CUCG U C AUGUCC
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-734_5p* |
| mirBase accession | None |
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| Sequence |
0- GAACUAUUCUGCAACAUUUGUU -22
Get sequence
|
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| Mature sequence |
Gmo-Mir-734_3p |
| mirBase accession | MIMAT0044184 |
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| Sequence |
38- UAAAUGCUGCAGAAUUGUGCUC -60
Get sequence
|
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