MirGeneDB ID | Gga-Mir-12246 |
Family name |
MIR-12246 (all species) |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-12246
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
G. gallus
|
Node of Origin (family) |
G. gallus
|
Genome context (Gallus_gallus.GRCg6a) |
21: 5009985-5010042 [-]
UCSC
Ensembl
|
Seed |
UGGGUGG |
Precursor (pre-Mir +30nt flank) |
UCUAUGACGUGGUUAGUGGGCAUGGUGGAGUUGGGUGGACGGUUGGACUUGAUGGUUGUAGUGGUCUUUUCCAACCUUCUUCCCCCCUUCACUAUUCCAUGGUUCUCUGAUCCAUCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUAUGACGUGGUUAGU---| C UU U C CUU UGGUU
GGG AUGGUGGAG GGG GGA GGUUGGA GA G
CCU UAUCACUUC CCC UCU CCAACCU CU U
CACUACCUAGUCUCUUGGUA^ - CC U U UUU GGUGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Gga-Mir-12246_5p |
mirBase accession | MIMAT0049981 |
Sequence |
0- UUGGGUGGACGGUUGGACUUGA -22
Get sequence
|
Star sequence |
Gga-Mir-12246_3p* |
mirBase accession | MIMAT0049982 |
Sequence |
36- UUUUCCAACCUUCUUCCCCCCU -58
Get sequence
|