| MirGeneDB ID | Esc-Novel-43-v1 |
|---|
| Family name |
COL-NOVEL-43 (all species) |
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| Seed |
AUCAAGA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
Esc-Novel-43-v2
|
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| Orthologues |
Obi-Novel-43
Ovu-Novel-43
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-43-v1_pre_SRIE01028465.1:65177-65317: 41-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGUUCCUUUUAUUACAAUGUUGUGGGAGACCUUCAGCAUGGCCUUUGACAGUUUACACGACACUUCGCUAUCAAGACCAUGGUGAGAGUCUGCCGUAACACAGUACUCAACUGGUCAUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUGUUCCUUUUAUUACAA--| G C G CC C UUACAC
UGUUGUGG AGAC UUCA CAUGG UUUGA AGU G
ACAAUGCC UCUG GAGU GUACC GAACU UCG A
UAUACUGGUCAACUCAUGAC^ G A G A- A CUUCAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | Although the 3' uridine is templated this give a three 3-nt offset. |
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Esc-Novel-43-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCUUCAGCAUGGCCUUUGACAGU -23
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-43-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UAUCAAGACCAUGGUGAGAGUC -61
Get sequence
|
|---|
