MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-43-v2

Family name COL-NOVEL-43 (all species)
Seed UCAAGAC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Novel-43-v1 
Orthologues Obi-Novel-43  Ovu-Novel-43 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-43-v1_pre_SRIE01028465.1:65177-65317: 41-101 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUUCCUUUUAUUACAAUGUUGUGGGAGACCUUCAGCAUGGCCUUUGACAGUUUACACGACACUUCGCUAUCAAGACCAUGGUGAGAGUCUGCCGUAACACAGUACUCAACUGGUCAUAU
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Structure
        10          20        30        40        50        60
UUGUUCCUUUUAUUACAA--|       G    C    G     CC     C  UUUACAC 
                    UGUUGUGG AGAC UUCA CAUGG  UUUGA AG       G
                    ACAAUGCC UCUG GAGU GUACC  GAACU UC       A
UAUACUGGUCAACUCAUGAC^       G    A    G     A-     A  GCUUCAC 
 .       110       100        90        80         70
Deep sequencing
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CommentAlthough the 3' uridine is templated this give a three 3-nt offset.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Star sequence

Esc-Novel-43-v2_5p*

mirBase accessionNone
Sequence
0- CCUUCAGCAUGGCCUUUGACAG -22
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Mature sequence

Esc-Novel-43-v2_3p

mirBase accessionNone
Sequence
40- AUCAAGACCAUGGUGAGAGUC -61
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