| MirGeneDB ID | Esc-Novel-23 |
|---|
| Family name |
COL-NOVEL-23 (all species) |
|---|
| Seed |
CCUUGAU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-23
Ovu-Novel-23
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-23_pre_SRIE01038711.1:71383-71638: 101-156 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUUUGGGCCGAUUCAAGGAUUGAGUUGUCUCCCUUGAUUUCUCUGCCACUCCUUUAUUGGCUGAAGUGUCUGAGGAAUCAUGUGAGUUGACCAAUCAGAUUACACCAUCUGAGACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUUGGGCCGAUUCAAG---| A U CCU UGC CCUUUA
GAUUG GUUG CUC UGAUUUCUC CACU U
CUAAC CAGU GAG ACUAAGGAG GUGA U
GCAGAGUCUACCACAUUAGA^ - U UGU UCU AGUCGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-23_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCCUUGAUUUCUCUGCCACUCC -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-23_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- AGUGUCUGAGGAAUCAUGUGAG -56
Get sequence
|
|---|
