| MirGeneDB ID | Obi-Novel-23 |
|---|
| Family name |
COL-NOVEL-23 (all species) |
|---|
| Seed |
CCUUGAU |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Novel-23
Ovu-Novel-23
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ417481: 1228842-1228897 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGUGUUGCUUUGAGGAAGGUUCGGUUCGAUCCCUUGAUUUCUCUGCCACUCCGUGAUUAGCUGAAGUGUCUGAGGAAUCAUGAGAGCGAACCAAUCACAAGUCUUCAGCAGUCACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUGUUGCUUUGAGGAA---| C A CCU UGC C GUGA
GGUU GGUUCG UC UGAUUUCUC CACU C U
CUAA CCAAGC AG ACUAAGGAG GUGA G U
ACACUGACGACUUCUGAACA^ - G AGU UCU A UCGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-23_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCCUUGAUUUCUCUGCCACUCC -22
Get sequence
|
|---|
| Star sequence |
Obi-Novel-23_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- AGUGUCUGAGGAAUCAUGAGAG -56
Get sequence
|
|---|
