| MirGeneDB ID | Egr-Mir-87-o28 |
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| Family name |
MIR-87 (all species) |
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| Species |
Hydatid worm (Echinococcus granulosus) |
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| MiRBase ID |
egr-mir-87
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| Paralogues |
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
E. granulosus
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000009.1: 962336-962429 [-]
UCSC
Ensembl
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| Seed |
UGAGCAA |
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Precursor
(pre-Mir +30nt flank) |
UCGUACUCCUGGAUGAUUCAGUCCGAAUGCCCACCUGUCAUUUUGCUCGAACCAGAGUUAUUCUUGGCGUCAUCCAUCUCUCGAAGGAUGUUUGCUAGGUUGGUGAGCAAAGUUUCAGGUGUGCUUUGGCUGAACAAGACUCCAAAGGCUGCGA
Get precursor sequence
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| Structure | 10 20 30 40 50 60 70
UCGUACUCCUGGAUGAU----| U U C UC GA GAGUUAUUCUUGGCGUCAUCCA
UCAG CCGAA GC CACCUG AUUUUGCUC ACCA U
AGUC GGUUU CG GUGGAC UGAAACGAG UGGU C
AGCGUCGGAAACCUCAGAACA^ - - U UU -- UGGAUCGUUUGUAGGAAGCUCU
150 140 130 120 110 100 90 80 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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| Star sequence |
Egr-Mir-87-o28_5p* |
| mirBase accession | MIMAT0020238 |
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| Sequence |
0- CCACCUGUCAUUUUGCUCGAACCA -24
Get sequence
|
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| Mature sequence |
Egr-Mir-87-o28_3p |
| mirBase accession | MIMAT0020239 |
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| Sequence |
72- GUGAGCAAAGUUUCAGGUGUGC -94
Get sequence
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