| MirGeneDB ID | Efe-Mir-2690-P1 |
|---|
| Family name |
MIR-2690 (all species) |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-2690-P2
Efe-Mir-2690-P3
Efe-Mir-2690-P4
|
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| Orthologues |
Cte-Mir-2690
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Sedentaria
|
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Genome context
(Efe_combined) |
Efet.01.550544: 395-458 [-]
|
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| Seed |
GUGAAAG |
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Precursor
(pre-Mir +30nt flank) |
AGCAGGAGAGGACGGGUGGAGGGGUCGGUCAACUCUGGACCCACUGUCUCAUACAAUGCAUCUGAUAAUUGUGUGAAAGUGAGGCCAGUGUGGUCCGCCUUCUCAUAAAGUCAUCGUCGUCGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGCAGGAGAGGACGGGUG--| U UCA U A - GUC AUGCAU
GAGGGG CGG AC CUGG CC CACU UCAUACA C
CUCUUC GCC UG GACC GG GUGA AGUGUGU U
CUGCUGCUGCUACUGAAAUA^ C UGG U - A A-- UAAUAG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Efe-Mir-2690-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AACUCUGGACCCACUGUCUCAUACA -25
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2690-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
41- UGUGAAAGUGAGGCCAGUGUGGU -64
Get sequence
|
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