MirGeneDB ID | Cte-Mir-2690 |
Family name |
MIR-2690 (all species) |
Seed |
GUGAAAG |
Species |
Polychaete worm (Capitella teleta) |
MiRBase ID |
cte-mir-2690
|
Paralogues |
|
Orthologues |
Efe-Mir-2690-P1
Efe-Mir-2690-P2
Efe-Mir-2690-P3
Efe-Mir-2690-P4
|
Node of Origin (locus) |
Annelida
|
Node of Origin (family) |
Annelida
|
Genome context (Capitella_teleta_v1.0) |
CAPTEscaffold_17: 567406-567468 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAUCGCCAAGAUCAUUAGAGGUUGUGUACAACUCUGGACCCACUUCCAUACAAUGACAGCAUUCGAAUGUGUGAAAGUGAGGCCAGUGUGGUAAACAACUUCUGCCUGUCGACUCCAUUCUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACAUCGCCAAGAUCAUU--| G A U A - C AUGACAG
AGAGGUUGU UAC AC CUGG CC CACUU CAUACA \
UCUUCAACA AUG UG GACC GG GUGAA GUGUGU C
GUCUUACCUCAGCUGUCCG^ A G U - A A AAGCUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cte-Mir-2690_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AACUCUGGACCCACUUCCAUACA -23
Get sequence
|
Mature sequence |
Cte-Mir-2690_3p |
mirBase accession | MIMAT0013543 |
Sequence |
40- UGUGAAAGUGAGGCCAGUGUGGU -63
Get sequence
|