| MirGeneDB ID | Cte-Mir-2690 |
|---|
| Family name |
MIR-2690 (all species) |
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| Species |
Polychaete worm (Capitella teleta) |
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| MiRBase ID |
cte-mir-2690
|
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| Paralogues |
|
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| Orthologues |
Efe-Mir-2690-P1
Efe-Mir-2690-P2
Efe-Mir-2690-P3
Efe-Mir-2690-P4
|
|---|
| Node of Origin (locus) |
Sedentaria
|
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| Node of Origin (family) |
Sedentaria
|
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Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_17: 567406-567469 [-]
Ensembl
|
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| Seed |
GUGAAAG |
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Precursor
(pre-Mir +30nt flank) |
GACAUCGCCAAGAUCAUUAGAGGUUGUGUACAACUCUGGACCCACUUCCAUACAAUGACAGCAUUCGAAUGUGUGAAAGUGAGGCCAGUGUGGUAAACAACUUCUGCCUGUCGACUCCAUUCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GACAUCGCCAAGAUCAU-| G A U A - C AUGACAG
UAGAGGUUGU UAC AC CUGG CC CACUU CAUACA \
GUCUUCAACA AUG UG GACC GG GUGAA GUGUGU C
GUCUUACCUCAGCUGUCC^ A G U - A A AAGCUUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cte-Mir-2690_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAACUCUGGACCCACUUCCAUACA -24
Get sequence
|
|---|
| Mature sequence |
Cte-Mir-2690_3p |
| mirBase accession | MIMAT0013543 |
|---|
| Sequence |
41- UGUGAAAGUGAGGCCAGUGUGGU -64
Get sequence
|
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