| MirGeneDB ID | Ebu-Mir-138-P4 |
|---|
| Family name |
MIR-138 (all species) |
|---|
| Species |
Inshore hagfish (Eptatretus burgeri) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ebu-Mir-138-P3
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. burgeri
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(Eburgeri_3) |
FYBX02010442.1: 4688859-4688919 [-]
UCSC
Ensembl
|
|---|
| Seed |
GCUGGUG |
|---|
Precursor
(pre-Mir +30nt flank) |
CCUAUUAUCCAAAGUCUGGUGUCCUGCUCAAGCUGGUGUUGUGAAUCAGGCCGUAAGUACUACCUCUCGGCCUUUUCACAGCACCAGGUGUAGCAAUGCACUCUUCUGCACCUGAAACGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCUAUUAUCCAAAGUCU-- CC -| AG UC UAAGUA
GGUGU UGCU CA CUGGUGUUGUGAA AGGCCG C
UCACG ACGA GU GACCACGACACUU UCCGGC U
UUGCAAAGUCCACGUCUUC UA U^ G- U- UCUCCA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ebu-Mir-138-P4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
|
|---|
| Star sequence |
Ebu-Mir-138-P4_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- GCCUUUUCACAGCACCAGGUGU -61
Get sequence
|
|---|
