| MirGeneDB ID | Ebu-Mir-130-P1f |
|---|
| Family name |
MIR-130 (all species) |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-130-P1e
Ebu-Mir-130-P1g
Ebu-Mir-130-P2e
Ebu-Mir-130-P4e
|
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| Orthologues |
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02007498.1: 490585-490639 [-]
UCSC
Ensembl
|
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| Seed |
AGUGCAA |
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Precursor
(pre-Mir +30nt flank) |
AUGACACCUUUAUGUCUACAGCUCCCUGCUGUCCUUUUAAUGUUGCACUGCUGCCUCCUGAAUCAGUGCAAUGUGAAAAGGGCAUCGGUGUGUUGGUAUUGCUGCCAAUUCAUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGACACCUUUAUGUCUA--| UCC C A CUGCCU
CAGC CUG UGUCCUUUU AUGUUGCACUG \
GUUG GGC ACGGGAAAA UGUAACGUGAC C
CUUACUUAACCGUCGUUAUG^ UGU U G UAAGUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-130-P1f_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUCCUUUUAAUGUUGCACUGCU -22
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-130-P1f_3p |
| mirBase accession | None |
|---|
| Sequence |
33- CAGUGCAAUGUGAAAAGGGCAU -55
Get sequence
|
|---|
