| MirGeneDB ID | Ebu-Mir-129-P5 |
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| Family name |
MIR-129 (all species) |
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| Seed |
AGCCCUU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-129-P6
|
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| Orthologues |
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Chordata
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Genome context
(Eburgeri_3) |
FYBX02010046.1: 1612329-1612390 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUCCGCCAGGCAGCACUGCUUCCCGCCGAUCUUUUUGCGGUCUGGGCUUGCUGUUUUUAUGGUCGCCAGCAAGCCCUUACCCCAAAAAGGAUCCGCGGGUAGCUCCAGCAUCGUUCAUCGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUCCGCCAGGCAGCACU-- U C -| C CU UGUUUUUA
GCU CCCGC GAU CUUUUUG GGU GGGCUUGC \
CGA GGGCG CUA GAAAAAC CCA CCCGAACG U
CAGCUACUUGCUACGACCU U C G^ C UU ACCGCUGG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-129-P5_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
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| Mature sequence |
Ebu-Mir-129-P5_3p |
| mirBase accession | None |
|---|
| Sequence |
40- AAGCCCUUACCCCAAAAAGGAU -62
Get sequence
|
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