| MirGeneDB ID | Dre-Mir-729 |
|---|
| Family name |
MIR-729 (all species) |
|---|
| Species |
Zebrafish (Danio rerio) |
|---|
| MiRBase ID |
dre-mir-729
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Loc-Mir-729
|
|---|
| Node of Origin (locus) |
Neopterygii
|
|---|
| Node of Origin (family) |
Neopterygii
|
|---|
Genome context
(danRer11) |
chr4: 13584505-13584565 [+]
UCSC
Ensembl
|
|---|
| Seed |
AUGGGUA |
|---|
Precursor
(pre-Mir +30nt flank) |
UUCAUGAACGUCAAGGGCCAUCCAGUGACCCGGGGUUGUAUUGUAACCAAGCUGUAAGUGUCCAUGAUGCAUGGGUAUGAUACGACCUGGGUUACAGAAUGGUGAUGGACAUCCUGGAAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUCAUGAACGUCAAGGG--| CCA G UG A A UGUAAGU
CCAU GUGACCCGGG UUGUAU UA CCA GC G
GGUA CAUUGGGUCC AGCAUA AU GGU CG U
UAAAGGUCCUACAGGUAGU^ AGA - GU G A UAGUACC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Dre-Mir-729_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGGGUUGUAUUGUAACCAAGCU -23
Get sequence
|
|---|
| Mature sequence |
Dre-Mir-729_3p |
| mirBase accession | MIMAT0003758 |
|---|
| Sequence |
39- CAUGGGUAUGAUACGACCUGGG -61
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-729
|
|---|
