MirGeneDB 2.1

MirGeneDB ID

Dpu-Novel-4

Family name DPU-NOVEL-4 (all species)
Seed CUUGGUU
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) Daphnia
Node of Origin (family) Daphnia
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_24: 361694-361754 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAACCUACAUUUUUUUGCUCGACUGGUGCUCUUGGUUGCUCGGUCUUUAGGAUUAUGAUUUAACAUUCCUAAAGCUCGGCUAGCAGGAUCCACCAAUUAAGCUUGGACUACUUACAAUCU
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Structure
        10         20        30         40        50        60
UGAACCUACAUUUUUUU-   CG C     C-|    GUU  U  GU       AUUAUGA 
                  GCU  A UGGUG  UCUUG   GC CG  CUUUAGG       U
                  CGA  U ACCAC  AGGAC   CG GC  GAAAUCC       U
UCUAACAUUCAUCAGGUU   AU A     CU^    GAU  -  UC       UUACAAU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Dpu-Novel-4_5p

mirBase accessionNone
Sequence
0- UCUUGGUUGCUCGGUCUUUAGG -22
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Co-mature sequence

Dpu-Novel-4_3p

mirBase accessionNone
Sequence
40- UAAAGCUCGGCUAGCAGGAUC -61
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